{- |

Module : ./OWL2/Taxonomy.hs

Description : Taxonomy extraction for OWL

Copyright : (c) Dominik Luecke, Uni Bremen 2008

License : GPLv2 or higher, see LICENSE.txt

Maintainer : luecke@informatik.uni-bremen.de

Stability : provisional

Portability : portabl

Taxonomy extraction for OWL

-}

module OWL2.Taxonomy ( onto2Tax ) where

import OWL2.MS

import OWL2.Sign

import OWL2.ManchesterPrint

import OWL2.ProvePellet

import Common.AS_Annotation

import Common.Result

import Taxonomy.MMiSSOntology

import Common.Taxonomy

import Common.Utils

import System.IO.Unsafe

import qualified Data.Foldable as Fold

import qualified Common.Lib.Rel as Rel

import qualified Data.Map as Map

import Data.List

import Data.Maybe

import qualified Data.Set as Set

-- | Derivation of an Taxonomy for OWL

onto2Tax :: TaxoGraphKind

-> MMiSSOntology

-> Sign -> [Named Axiom]

-> Result MMiSSOntology

onto2Tax gk inOnto sig sens = case gk of

KSubsort -> fail "Dear user, this logic is single sorted, sorry!"

KConcept -> do

cs <- unsafePerformIO $ runClassifier sig sens

tree <- relBuilder cs

let subRel = Rel.transReduce $ foldl Rel.union Rel.empty tree

superRel = Rel.irreflex $ Rel.transpose subRel

superMap = Rel.toMap superRel

classes = Set.toList $ Set.map fst $ Rel.toSet subRel

makeMiss inOnto superMap classes

dropClutter :: String -> String

dropClutter = tryToStripPrefix "unamed:"

-- | Generation of a MissOntology

makeMiss :: MMiSSOntology

-> Map.Map String (Set.Set String)

-> [String]

-> Result MMiSSOntology

makeMiss o r =

Fold.foldlM (\ x y -> fromWithError $ insertClass x (dropClutter y) ""

(case Map.lookup y r of

Nothing -> []

Just z -> Set.toList $ Set.map dropClutter z

) Nothing) o

-- | Builder for all relations

relBuilder :: String

-> Result [Rel.Rel String]

relBuilder tr =

let ln = filter (not . null) $ lines tr in

if any (isPrefixOf "ERROR: ") ln || null ln then

fail "Classification via Pellet failed! Ontology might be inconsistent!"

else return $ map relBuild $ splitter $ map tail ln

-- | splitter for output

splitter :: [String] -> [[String]]

splitter ls = case ls of

[] -> []

(h : t) -> let (l, r) = span (\ x -> head x == ' ') t in (h : l) : splitter r

-- | builder for a single relation

relBuild :: [String]

-> Rel.Rel String

relBuild s = case s of

[] -> Rel.empty

(t : ts) ->

let nt = map (drop 3) ts

children = splitter nt

ch = foldl Rel.union Rel.empty $ map relBuild children

suc = map head children

in Rel.insertKey t $ Rel.fromList (zip (repeat t) suc) `Rel.union` ch

-- | Invocation of Pellet

runClassifier :: Sign -> [Named Axiom] -> IO (Result String)

runClassifier sig sen = do

let th = show $ printOWLBasicTheory (sig, filter isAxiom sen)

tLimit = 800

res <- runTimedPellet "classify" "PelletClassifier" th Nothing tLimit

return $ case res of

Nothing -> fail $ "Timeout after " ++ show tLimit ++ " seconds!"

Just (progTh, out, _) ->

if progTh then return out else fail "Pellet not found"