1719 test suite does not honor hets port settings (#1747) * Add settings key for hets testing port. * Use the hets testing port.

982 error this iri is already being processed (#1697) * Add expiration parameter to Semaphore After the expiration, the semaphore is unlocked. This allows dead processes (e.g. by kill -9) to release the lock again. * Namespace the redis semaphore at ontohub:semaphore. * Code style. * Code style: use class << self block. * Add concurrency testing gem. * Completely revamp Semaphore * Put it into the same redis-namespace as sidekiq. * Add method to check if a lock is closed. * Namespace semaphores even deeper. Checking if a lock is closed is not an atomic operation. To make it atomic, we put the check into a mutexed part. In order to really exclude the locking and unlocking from this mutexed check, these two operations must be mutexed as well with the same key (LOCK_ACTION_KEY). Unfortunately, using many threads/processes in an example makes the test suite hang. This is because of celluloid. Maybe we can unskip the example after upgrading to sidekiq 4 and dropping sidetiq. * Add settings keys for Redis. * Use redis namespace setting for Semaphore. * Share redis connections between Sidekiq and Semaphore When all connections are in use, any Redis call will block until a connection is freed. Sidekiq is now namespaced deeper in order to prevent conflicts with the semaphore. * Fix locked? and perform_exclusively signatures. * Add lock and unlock methods. * Use separate redis namespaces for our environments. * Use Semaphore only if not testing * Use Semaphore when parsing an Ontology * Remove not needed method perform_async_on_queue. * Refactor all the Worker classes for parsing Now, all comes down to the new OntologyParsingWorker. It performs on a queue of triples containing the version id, options for the version and the try_count (number of the next parsing attempt). If parsing a version fails, it is put back to the queue (at the end), with an incremented try_count. If this happens too often for the same version, it is given to the SequentialOntologyParsingWorker that only parses one OntologyVersion at a time. The OntologyParsingPriorityWorker is a more elegant way to use the priotitized queue. All the background parsing is now performed via the OntologyParsingWorker or its subclasses. * Be explicit about the namespace. * Obey Hound.

Add setting for git_ssh path.

Rename symlink_path setting to git_daemon_path.

Change settings to use URLs of Hets instances.

Remove trailing slash from verify_url (it's cleaner).

Use nil values for paths settings where applicable Also, comment on what the implied values are in the respective line.

Remove git_home settings key.

Hotfix: add comments on default paths.

Allow to set an email without the host-part Now we can either set `noreply` or `noreply@example.com` as the email address. If the host-part is omitted, it will be appended automatically. If the host-part is specified, it must be the same as the FQDN.

Add setting for sidekiq log level.

Move secret token to settings.yml.

use minutes instead of hours for hets-update Use minutes instead of hours to set the interval between hets-instance update requests.

add regularly scheduled job to check HetsInstance this check actually does not perform a hets-update, but checks whether the instance does have any changes wrt. to version and the state of reachability.

Introduce and use AccessToken model.

Set fully qualified domain name config properly.

Introduce hets-settings for the process manager.

Allow to use ~git as git_home Expand paths. This allows to use special paths like ~username.

Remove unneeded git-user/group/home configuration The task, the user and group configuration had done, is now part of cp_keys. We don't need that configuration anymore. Also, git_home is now set explicitly in the settings.

Make Settings.paths.git_home configurable.

Add comment on ActionMailer's domain setting.

Set proper default repositories path.

Add paths settings, simplify paths initializer.

Specify action_mailer configuration For this task, also add inferred fully qualified domain name and port config.

Rename fallback committer settings.

Add git.user and git.group keys to default config.

Set default hets workers count to 1.

added indefinite article gem

Add setting for hets workers count.

Revert renaming in config/settings.yml.

Run rename refactor script.

removal of travis error casuing changes

all remaining generalizations

some more generalizarion via OMS

intial generalizations via OMS

add rules for priority-push to settings.yml See information about the rules here: https://github.com/ontohub/ontohub/issues/694#issue-27703382.

put default branch into config file

remove LimitsInitializer

add default timeout limit (6 hours).

Make formats dropdown menu presence configurable in settings.yml.

discussion at Skype conference with Maria Keet, Oliver Kutz, Aleksandra Sojic, Fabian Neuhaus, Christoph Lange, and Mihai Codescu

Fixed syntax error regarding to formality levels in settings.yml.

removed ontology type distributed ontology

Improved ontology formality levels

Task description type text, metadata in seeds.

possible values for metadata

use fallback-commit user if no one is supplied.

add code to maintain the external repository.

Hide symbols tab with a configuration

Display HEAD-commit-id in footer for development.

One step more towards SSH access

Add top navbar

Better config of allowed iri schemes, more useful test for logics.

rails_config and exception_notification added