namespace :test do

# We want to purge our database our own way, without deleting everything

Rake::Task['db:test:purge'].overwrite do

Rails.env = 'test'

Rake::Task['db:redis:clean'].invoke

Rake::Task['db:migrate:clean'].invoke

end

def hets_path

`which hets`.strip

end

def hets_out_file_for(ontology_file)

basename = File.basename(ontology_file).sub(/\.[^.]+$/, '.xml')

File.join('test/fixtures/ontologies/hets-out/', basename)

end

def hets_args

YAML.load(File.open('config/hets.yml'))['cmd_line_options']

end

def perform_hets_on(file)

args = hets_args << '-O test/fixtures/ontologies/hets-out'

system("hets #{args.join(' ')} #{file}")

end

def ontology_files

globbed_files = Dir.glob('test/fixtures/ontologies/**/*')

globbed_files.select do |file|

!file.end_with?('xml') && !File.directory?(file)

end

end

desc 'Update all ontology fixtures'

task :freshen_ontology_fixtures do

ontology_files.each do |file|

puts "Calling hets for: #{file}"

perform_hets_on(file)

end

end

end