{- |

Module : $Header$

Copyright : (c) Felix Gabriel Mance

License : GPLv2 or higher, see LICENSE.txt

Maintainer : f.mance@jacobs-university.de

Stability : provisional

Portability : portable

Contains : OWL2 XML Syntax Parsing

-}

module OWL2.XML where

import Text.XML.Light

import Data.Maybe

import OWL2.AS

import OWL2.MS

import Common.Lexer

import Data.List

import qualified Data.Map as Map

type XMLBase = String

{- two functions from Text.XML.Light.Proc version 1.3.7 for compatibility

with previous versions -}

vLookupAttrBy :: (Text.XML.Light.QName -> Bool) -> [Attr] -> Maybe String

vLookupAttrBy p as = attrVal `fmap` find (p . attrKey) as

vFindAttrBy :: (Text.XML.Light.QName -> Bool) -> Element -> Maybe String

vFindAttrBy p e = vLookupAttrBy p (elAttribs e)

simpleSplit :: IRI -> IRI

simpleSplit qn =

let lp = localPart qn

np = takeWhile (/= ':') lp

':' : nlp = dropWhile (/= ':') lp

in qn {namePrefix = np, localPart = nlp}

{- if the IRI contains ':', it is split at the colon

else, the xml:base needs to be pre-pended to the addres

and then the IRI must be splitted -}

splitIRI :: XMLBase -> IRI -> IRI

splitIRI b qn =

let r = localPart qn

in if ':' `elem` r then simpleSplit qn

else simpleSplit $ qn {localPart = b ++ r, isFullIri = True}

-- gets the actual name of an axiom in XML Syntax

getName :: Element -> String

getName e =

let n = (qName . elName) e

q = (qURI . elName) e

in case q of

Just "http://www.w3.org/2002/07/owl#" -> n

_ -> ""

getIRI :: XMLBase -> Element -> IRI

getIRI b e =

let [a] = elAttribs e

iri = attrVal a

f = case qName $ attrKey a of

"abbreviatedIRI" -> False

_ -> ':' `elem` iri

in splitIRI b $ nullQName {localPart = iri, isFullIri = f}

getFullOrAbbrIRI :: XMLBase -> Element -> IRI

getFullOrAbbrIRI b e =

let cont = strContent e

in case getName e of

"abbreviatedIRI" -> simpleSplit $ nullQName {localPart = cont}

"IRI" -> if ':' `elem` cont then

simpleSplit $ nullQName {localPart = cont,

isFullIri = True}

else splitIRI b

$ nullQName {localPart = cont}

_ -> error "invalid type of iri"

-- gets one prefix with the corresponding iri

get1PrefMap :: Element -> (String, IRI)

get1PrefMap e =

let [pref, pmap] = map attrVal $ elAttribs e

in (pref, mkQName pmap)

getInt :: Element -> Int

getInt e = let [int] = elAttribs e in value 10 $ attrVal int

isSmth :: String -> Text.XML.Light.QName -> Bool

isSmth s = (s ==) . qName

isSmthList :: [String] -> Text.XML.Light.QName -> Bool

isSmthList l qn = qName qn `elem` l

isNotSmth :: Text.XML.Light.QName -> Bool

isNotSmth q = let qn = qName q in qn /= "Declaration" &&

qn /= "Prefix" && qn /= "Import" && qn /= "Annotation"

filterCh :: String -> Element -> [Element]

filterCh s = filterChildrenName (isSmth s)

filterChL :: [String] -> Element -> [Element]

filterChL l = filterChildrenName (isSmthList l)

filterC :: String -> Element -> Element

filterC s e = fromMaybe (error "child not found")

(filterChildName (isSmth s) e)

filterCL :: [String] -> Element -> Element

filterCL l e = fromMaybe (error "child not found")

(filterChildName (isSmthList l) e)

entityList :: [String]

entityList = ["Class", "Datatype", "NamedIndividual",

"ObjectProperty", "DataProperty", "AnnotationProperty"]

individualList :: [String]

individualList = ["NamedIndividual", "AnonymousIndividual"]

objectPropList :: [String]

objectPropList = ["ObjectProperty", "ObjectInverseOf"]

dataPropList :: [String]

dataPropList = ["DataProperty"]

dataRangeList :: [String]

dataRangeList = ["Datatype", "DatatypeRestriction", "DataComplementOf",

"DataOneOf", "DataIntersectionOf", "DataUnionOf"]

classExpressionList :: [String]

classExpressionList = ["Class", "ObjectIntersectionOf", "ObjectUnionOf",

"ObjectComplementOf", "ObjectOneOf", "ObjectSomeValuesFrom",

"ObjectAllValuesFrom", "ObjectHasValue", "ObjectHasSelf",

"ObjectMinCardinality", "ObjectMaxCardinality", "ObjectExactCardinality",

"DataSomeValuesFrom", "DataAllValuesFrom", "DataHasValue",

"DataMinCardinality", "DataMaxCardinality", "DataExactCardinality"]

getEntityType :: String -> EntityType

getEntityType ty = case ty of

"Class" -> Class

"Datatype" -> Datatype

"NamedIndividual" -> NamedIndividual

"ObjectProperty" -> ObjectProperty

"DataProperty" -> DataProperty

"AnnotationProperty" -> AnnotationProperty

_ -> error "not entity type"

toEntity :: XMLBase -> Element -> Entity

toEntity b e = Entity (getEntityType $ (qName . elName) e) (getIRI b e)

getDeclaration :: XMLBase -> Element -> Frame

getDeclaration b e = case getName e of

"Declaration" ->

let ent = filterCL entityList e

ans = getAllAnnos b e

in Frame (SimpleEntity $ toEntity b ent)

[AnnFrameBit ans AnnotationFrameBit]

_ -> error "not declaration"

isPlainLiteral :: String -> Bool

isPlainLiteral s =

"http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral" == s

getLiteral :: Element -> Literal

getLiteral e = case getName e of

"Literal" ->

let lf = strContent e

mdt = findAttr (unqual "datatypeIRI") e

mattr = vFindAttrBy (isSmth "lang") e

in case mdt of

Nothing -> case mattr of

Just lang -> Literal lf (Untyped $ Just lang)

Nothing -> Literal lf (Untyped Nothing)

Just dt -> case mattr of

Just lang -> Literal lf (Untyped $ Just lang)

Nothing -> if isPlainLiteral dt then

Literal lf (Untyped Nothing)

else Literal lf (Typed $ mkQName dt)

_ -> error "not literal"

getValue :: XMLBase -> Element -> AnnotationValue

getValue b e = case getName e of

"Literal" -> AnnValLit $ getLiteral e

"AnonymousIndividual" -> AnnValue $ getIRI b e

_ -> AnnValue $ getFullOrAbbrIRI b e

getSubject :: XMLBase -> Element -> IRI

getSubject b e = case getName e of

"AnonymousIndividual" -> getIRI b e

_ -> getFullOrAbbrIRI b e

getAnnotation :: XMLBase -> Element -> Annotation

getAnnotation b e =

let hd = filterCh "Annotation" e

[ap] = filterCh "AnnotationProperty" e

[av] = filterCh "Literal" e ++ filterCh "IRI" e

++ filterCh "AnonymousIndividual" e

++ filterCh "abbreviatedIRI" e

in

Annotation (map (getAnnotation b) hd)

(getIRI b ap) (getValue b av)

getAllAnnos :: XMLBase -> Element -> [Annotation]

getAllAnnos b e = map (getAnnotation b)

$ filterCh "Annotation" e

getObjProp :: XMLBase -> Element -> ObjectPropertyExpression

getObjProp b e = case getName e of

"ObjectProperty" -> ObjectProp $ getIRI b e

"ObjectInverseOf" ->

let [ch] = elChildren e

[cch] = elChildren ch

in case getName ch of

"ObjectInverseOf" -> getObjProp b cch

"ObjectProperty" -> ObjectInverseOf $ ObjectProp $ getIRI b ch

_ -> error "not objectProperty"

_ -> error "not objectProperty"

getFacetValuePair :: XMLBase -> Element -> (ConstrainingFacet, RestrictionValue)

getFacetValuePair b e = case getName e of

"FacetRestriction" ->

let [ch] = elChildren e

in (getIRI b e, getLiteral ch)

_ -> error "not facet"

getDataRange :: XMLBase -> Element -> DataRange

getDataRange b e =

let ch@(ch1 : _) = elChildren e

in case getName e of

"Datatype" -> DataType (getIRI b e) []

"DatatypeRestriction" ->

let dt = getIRI b $ filterC "Datatype" e

fvp = map (getFacetValuePair b)

$ filterCh "FacetRestriction" e

in DataType dt fvp

"DataComplementOf" -> DataComplementOf

$ getDataRange b ch1

"DataOneOf" -> DataOneOf

$ map getLiteral $ filterCh "Literal" e

"DataIntersectionOf" -> DataJunction IntersectionOf

$ map (getDataRange b) ch

"DataUnionOf" -> DataJunction UnionOf

$ map (getDataRange b) ch

_ -> error "XML parser: not data range"

getClassExpression :: XMLBase -> Element -> ClassExpression

getClassExpression b e =

let ch@(ch1 : _) = elChildren e

rch1 : _ = reverse ch

in case getName e of

"Class" -> Expression $ getIRI b e

"ObjectIntersectionOf" -> ObjectJunction IntersectionOf

$ map (getClassExpression b) ch

"ObjectUnionOf" -> ObjectJunction UnionOf

$ map (getClassExpression b) ch

"ObjectComplementOf" -> ObjectComplementOf

$ getClassExpression b ch1

"ObjectOneOf" -> ObjectOneOf

$ map (getIRI b) ch

"ObjectSomeValuesFrom" -> ObjectValuesFrom SomeValuesFrom

(getObjProp b ch1) (getClassExpression b rch1)

"ObjectAllValuesFrom" -> ObjectValuesFrom AllValuesFrom

(getObjProp b ch1) (getClassExpression b rch1)

"ObjectHasValue" -> ObjectHasValue (getObjProp b ch1) (getIRI b rch1)

"ObjectHasSelf" -> ObjectHasSelf $ getObjProp b ch1

"ObjectMinCardinality" -> if length ch == 2 then

ObjectCardinality $ Cardinality

MinCardinality (getInt e) (getObjProp b ch1)

$ Just $ getClassExpression b rch1

else ObjectCardinality $ Cardinality

MinCardinality (getInt e) (getObjProp b ch1) Nothing

"ObjectMaxCardinality" -> if length ch == 2 then

ObjectCardinality $ Cardinality

MaxCardinality (getInt e) (getObjProp b ch1)

$ Just $ getClassExpression b rch1

else ObjectCardinality $ Cardinality

MaxCardinality (getInt e) (getObjProp b ch1) Nothing

"ObjectExactCardinality" -> if length ch == 2 then

ObjectCardinality $ Cardinality

ExactCardinality (getInt e) (getObjProp b ch1)

$ Just $ getClassExpression b rch1

else ObjectCardinality $ Cardinality

ExactCardinality (getInt e) (getObjProp b ch1) Nothing

"DataSomeValuesFrom" ->

let dp = getIRI b ch1

dr = rch1

in DataValuesFrom SomeValuesFrom dp (getDataRange b dr)

"DataAllValuesFrom" ->

let dp = getIRI b ch1

dr = rch1

in DataValuesFrom AllValuesFrom dp (getDataRange b dr)

"DataHasValue" -> DataHasValue (getIRI b ch1) (getLiteral rch1)

"DataMinCardinality" -> if length ch == 2 then

DataCardinality $ Cardinality

MinCardinality (getInt e) (getIRI b ch1)

$ Just $ getDataRange b rch1

else DataCardinality $ Cardinality

MinCardinality (getInt e) (getIRI b ch1) Nothing

"DataMaxCardinality" -> if length ch == 2 then

DataCardinality $ Cardinality

MaxCardinality (getInt e) (getIRI b ch1)

$ Just $ getDataRange b rch1

else DataCardinality $ Cardinality

MaxCardinality (getInt e) (getIRI b ch1) Nothing

"DataExactCardinality" -> if length ch == 2 then

DataCardinality $ Cardinality

ExactCardinality (getInt e) (getIRI b ch1)

$ Just $ getDataRange b rch1

else DataCardinality $ Cardinality

ExactCardinality (getInt e) (getIRI b ch1) Nothing

_ -> error "XML parser: not ClassExpression"

getClassAxiom :: XMLBase -> Element -> Axiom

getClassAxiom b e =

let ch = elChildren e

as = getAllAnnos b e

l@(hd : tl) = filterChL classExpressionList e

[dhd, dtl] = filterChL dataRangeList e

cel = map (getClassExpression b) l

in case getName e of

"SubClassOf" ->

let [sub, super] = drop (length ch - 2) ch

in PlainAxiom (ClassEntity $ getClassExpression b sub)

$ ListFrameBit (Just SubClass) $ ExpressionBit

[(as, getClassExpression b super)]

"EquivalentClasses" -> PlainAxiom (Misc as) $ ListFrameBit

(Just (EDRelation Equivalent)) $ ExpressionBit

$ map (\ x -> ([], x)) cel

"DisjointClasses" -> PlainAxiom (Misc as) $ ListFrameBit

(Just (EDRelation Disjoint)) $ ExpressionBit

$ map (\ x -> ([], x)) cel

"DisjointUnion" -> PlainAxiom (ClassEntity $ getClassExpression b hd)

$ AnnFrameBit as $ ClassDisjointUnion $ map (getClassExpression b) tl

"DatatypeDefinition" -> PlainAxiom (ClassEntity $ getClassExpression b dhd)

$ AnnFrameBit as $ DatatypeBit $ getDataRange b dtl

_ -> hasKey b e

hasKey :: XMLBase -> Element -> Axiom

hasKey b e = case getName e of

"HasKey" ->

let as = getAllAnnos b e

[ce] = filterChL classExpressionList e

op = map (getObjProp b) $ filterChL objectPropList e

dp = map (getIRI b) $ filterChL dataPropList e

in PlainAxiom (ClassEntity $ getClassExpression b ce)

$ AnnFrameBit as $ ClassHasKey op dp

_ -> getOPAxiom b e

getOPAxiom :: XMLBase -> Element -> Axiom

getOPAxiom b e =

let as = getAllAnnos b e

op = getObjProp b $ filterCL objectPropList e

in case getName e of

"SubObjectPropertyOf" ->

let opchain = concatMap (map $ getObjProp b) $ map elChildren

$ filterCh "ObjectPropertyChain" e

in if null opchain

then let [hd, lst] = map (getObjProp b)

$ filterChL objectPropList e

in PlainAxiom (ObjectEntity hd)

$ ListFrameBit (Just SubPropertyOf) $ ObjectBit

[(as, lst)]

else PlainAxiom (ObjectEntity op) $ AnnFrameBit as

$ ObjectSubPropertyChain opchain

"EquivalentObjectProperties" ->

let opl = map (getObjProp b) $ filterChL objectPropList e

in PlainAxiom (Misc as) $ ListFrameBit (Just (EDRelation Equivalent))

$ ObjectBit $ map (\ x -> ([], x)) opl

"DisjointObjectProperties" ->

let opl = map (getObjProp b) $ filterChL objectPropList e

in PlainAxiom (Misc as) $ ListFrameBit (Just (EDRelation Disjoint))

$ ObjectBit $ map (\ x -> ([], x)) opl

"ObjectPropertyDomain" ->

let ce = getClassExpression b $ filterCL classExpressionList e

in PlainAxiom (ObjectEntity op) $ ListFrameBit

(Just (DRRelation ADomain)) $ ExpressionBit [(as, ce)]

"ObjectPropertyRange" ->

let ce = getClassExpression b $ filterCL classExpressionList e

in PlainAxiom (ObjectEntity op) $ ListFrameBit

(Just (DRRelation ARange)) $ ExpressionBit [(as, ce)]

"InverseObjectProperties" ->

let [hd, lst] = map (getObjProp b) $ filterChL objectPropList e

in PlainAxiom (ObjectEntity hd)

$ ListFrameBit (Just InverseOf) $ ObjectBit

[(as, lst)]

"FunctionalObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Functional)]

"InverseFunctionalObjectProperty" -> PlainAxiom (ObjectEntity op)

$ ListFrameBit Nothing $ ObjectCharacteristics [(as, InverseFunctional)]

"ReflexiveObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Reflexive)]

"IrreflexiveObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Irreflexive)]

"SymmetricObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Symmetric)]

"AsymmetricObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Asymmetric)]

"TransitiveObjectProperty" -> PlainAxiom (ObjectEntity op) $ ListFrameBit

Nothing $ ObjectCharacteristics [(as, Transitive)]

_ -> getDPAxiom b e

getDPAxiom :: XMLBase -> Element -> Axiom

getDPAxiom b e =

let as = getAllAnnos b e

in case getName e of

"SubDataPropertyOf" ->

let [hd, lst] = map (getIRI b) $ filterChL dataPropList e

in PlainAxiom (SimpleEntity $ Entity DataProperty hd)

$ ListFrameBit (Just SubPropertyOf) $ DataBit [(as, lst)]

"EquivalentDataProperties" ->

let dpl = map (getIRI b) $ filterChL dataPropList e

in PlainAxiom (Misc as) $ ListFrameBit (Just (EDRelation Equivalent))

$ DataBit $ map (\ x -> ([], x)) dpl

"DisjointDataProperties" ->

let dpl = map (getIRI b) $ filterChL dataPropList e

in PlainAxiom (Misc as) $ ListFrameBit (Just (EDRelation Disjoint))

$ DataBit $ map (\ x -> ([], x)) dpl

"DataPropertyDomain" ->

let dp = getIRI b $ filterCL dataPropList e

ce = getClassExpression b $ filterCL classExpressionList e

in PlainAxiom (SimpleEntity $ Entity DataProperty dp)

$ ListFrameBit (Just (DRRelation ADomain))

$ ExpressionBit [(as, ce)]

"DataPropertyRange" ->

let dp = getIRI b $ filterCL dataPropList e

dr = getDataRange b $ filterCL dataRangeList e

in PlainAxiom (SimpleEntity $ Entity DataProperty dp)

$ ListFrameBit Nothing $ DataPropRange [(as, dr)]

"FunctionalDataProperty" ->

let dp = getIRI b $ filterCL dataPropList e

in PlainAxiom (SimpleEntity $ Entity DataProperty dp)

$ AnnFrameBit as DataFunctional

_ -> getDataAssertion b e

getDataAssertion :: XMLBase -> Element -> Axiom

getDataAssertion b e =

let as = getAllAnnos b e

dp = getIRI b $ filterCL dataPropList e

ind = getIRI b $ filterCL individualList e

lit = getLiteral $ filterC "Literal" e

in case getName e of

"DataPropertyAssertion" ->

PlainAxiom (SimpleEntity $ Entity NamedIndividual ind)

$ ListFrameBit Nothing $ IndividualFacts

[(as, DataPropertyFact Positive dp lit)]

"NegativeDataPropertyAssertion" ->

PlainAxiom (SimpleEntity $ Entity NamedIndividual ind)

$ ListFrameBit Nothing $ IndividualFacts

[(as, DataPropertyFact Negative dp lit)]

_ -> getObjectAssertion b e

getObjectAssertion :: XMLBase -> Element -> Axiom

getObjectAssertion b e =

let as = getAllAnnos b e

op = getObjProp b $ filterCL objectPropList e

[hd, lst] = map (getIRI b) $ filterChL individualList e

in case getName e of

"ObjectPropertyAssertion" ->

PlainAxiom (SimpleEntity $ Entity NamedIndividual hd)

$ ListFrameBit Nothing $ IndividualFacts

[(as, ObjectPropertyFact Positive op lst)]

"NegativeObjectPropertyAssertion" ->

PlainAxiom (SimpleEntity $ Entity NamedIndividual hd)

$ ListFrameBit Nothing $ IndividualFacts

[(as, ObjectPropertyFact Negative op lst)]

_ -> getIndividualAssertion b e

getIndividualAssertion :: XMLBase -> Element -> Axiom

getIndividualAssertion b e =

let as = getAllAnnos b e

ind = map (getIRI b) $ filterChL individualList e

l = map (\ x -> ([], x)) ind

in case getName e of

"SameIndividual" ->

PlainAxiom (Misc as) $ ListFrameBit (Just (SDRelation Same))

$ IndividualSameOrDifferent l

"DifferentIndividuals" ->

PlainAxiom (Misc as) $ ListFrameBit (Just (SDRelation Different))

$ IndividualSameOrDifferent l

_ -> getClassAssertion b e

getClassAssertion :: XMLBase -> Element -> Axiom

getClassAssertion b e = case getName e of

"ClassAssertion" ->

let as = getAllAnnos b e

ce = getClassExpression b $ filterCL classExpressionList e

ind = getIRI b $ filterCL individualList e

in PlainAxiom (SimpleEntity $ Entity NamedIndividual ind)

$ ListFrameBit (Just Types) $ ExpressionBit [(as, ce)]

_ -> getAnnoAxiom b e

getAnnoAxiom :: XMLBase -> Element -> Axiom

getAnnoAxiom b e =

let as = getAllAnnos b e

ap = getIRI b $ filterC "AnnotationProperty" e

in case getName e of

"AnnotationAssertion" ->

let [s, v] = filterChL ["abbreviatedIRI", "IRI",

"AnonymousIndividual", "Literal"] e

in PlainAxiom (SimpleEntity $ Entity AnnotationProperty ap)

$ AnnFrameBit [Annotation as (getSubject b s) (getValue b v)]

AnnotationFrameBit

"SubAnnotationPropertyOf" ->

let [hd, lst] = map (getIRI b) $ filterCh "AnnotationProperty" e

in PlainAxiom (SimpleEntity $ Entity AnnotationProperty hd)

$ ListFrameBit (Just SubPropertyOf) $ AnnotationBit [(as, lst)]

"AnnotationPropertyDomain" ->

let [ch] = filterChL ["IRI", "abbreviatedIRI"] e

iri = getFullOrAbbrIRI b ch

in PlainAxiom (SimpleEntity $ Entity AnnotationProperty ap)

$ ListFrameBit (Just (DRRelation ADomain))

$ AnnotationBit [(as, iri)]

"AnnotationPropertyRange" ->

let [ch] = filterChL ["IRI", "abbreviatedIRI"] e

iri = getFullOrAbbrIRI b ch

in PlainAxiom (SimpleEntity $ Entity AnnotationProperty ap)

$ ListFrameBit (Just (DRRelation ARange))

$ AnnotationBit [(as, iri)]

_ -> error "bad frame"

getImports :: XMLBase -> Element -> [ImportIRI]

getImports b e = map (splitIRI b . mkQName . strContent) $ filterCh "Import" e

getPrefixMap :: Element -> PrefixMap

getPrefixMap e =

let prl = map get1PrefMap $ filterCh "Prefix" e

in Map.fromList $ map (\ (p, m) -> (p, showQU m)) prl

getOntologyIRI :: Element -> OntologyIRI

getOntologyIRI e =

let oi = findAttr (unqual "ontologyIRI") e

in case oi of

Nothing -> dummyQName

Just iri -> splitIRI "" $ nullQName {localPart = iri, isFullIri = True}

axToFrame :: Axiom -> Frame

axToFrame (PlainAxiom e fb) = Frame e [fb]

getFrames :: XMLBase -> Element -> [Frame]

getFrames b e =

let ax = filterChildrenName isNotSmth e

in map (getDeclaration b) (filterCh "Declaration" e)

++ map (axToFrame . getClassAxiom b) ax

getAxioms :: XMLBase -> Element -> [Axiom]

getAxioms b e = map (getClassAxiom b) $ filterChildrenName isNotSmth e

getBase :: Element -> XMLBase

getBase e = fromJust $ vFindAttrBy (isSmth "base") e

xmlBasicSpec :: Element -> OntologyDocument

xmlBasicSpec e = let b = getBase e in emptyOntologyDoc

{

ontology = emptyOntologyD

{

ontFrames = getFrames b e,

imports = getImports b e,

ann = [getAllAnnos b e],

name = getOntologyIRI e

},

prefixDeclaration = getPrefixMap e

}