{- |

Module : $Header$

Copyright : Heng Jiang, Uni Bremen 2004-2007

License : similar to LGPL, see HetCATS/LICENSE.txt or LIZENZ.txt

Maintainer : jiang@informatik.uni-bremen.de

Stability : provisional

Portability : non-portable (imports Logic.Logic)

analyse OWL files by calling the external Java parser.

-}

module OWL.OWLAnalysis (structureAna, parseOWL) where

import OWL.AS

import OWL.Namespace

import OWL.Logic_OWL

import OWL.ReadWrite ()

import OWL.StaticAnalysis

import OWL.Sign

import OWL.StructureAnalysis

import Static.GTheory

import Static.DevGraph

import Static.ComputeTheory

import Common.Id

import Common.GlobalAnnotations

import Common.ExtSign

import Common.LibName

import Common.Result

import Common.Utils

import Common.AS_Annotation hiding (isAxiom, isDef)

import ATerm.ReadWrite

import ATerm.Unshared

import Driver.Options

import Logic.Comorphism

import Logic.Grothendieck

import Logic.Logic

import Logic.Prover

import System.IO

import System.Time

import System.Cmd (system)

import System.Directory

import System.Exit

import System.Environment (getEnv)

import qualified Data.Map as Map

import qualified Data.List as List

import Data.Graph.Inductive.Graph

import qualified Data.Graph.Inductive.Query.DFS as DFS

import qualified Data.Graph.Inductive.Query.BFS as BFS

import Data.Maybe (fromJust)

-- | call for owl parser (env. variable $HETS_OWL_TOOLS muss be defined)

parseOWL :: FilePath -- ^ local filepath or uri

-> IO OntologyMap -- ^ map: uri -> OntologyFile

parseOWL filename =

do

pwd <- getEnv "PWD"

if null filename

then

error "empty file name!"

else do

currTime <- getClockTime

calend <- toCalendarTime currTime

tmpDir <- getTemporaryDirectory

(tmpFile, _) <- openTempFile tmpDir $

basename filename ++ "-" ++ buildTime calend ++ ".term"

if checkUri filename

then

do exitCode <-

system ("$HETS_OWL_TOOLS/owl_parser "

++ filename ++

" " ++ tmpFile)

run exitCode tmpFile

else if head filename == '/'

then

do

exitCode <-

system ("$HETS_OWL_TOOLS/owl_parser file://"

++ filename ++ " " ++ tmpFile)

run exitCode tmpFile

else do

exitCode <-

system("$HETS_OWL_TOOLS/owl_parser file://"

++ pwd ++ "/" ++ filename ++

" " ++ tmpFile)

run exitCode tmpFile

where buildTime cTime =

show (ctYear cTime) ++ show (ctMonth cTime)

++ show (ctDay cTime) ++ show (ctHour cTime)

++ show (ctMin cTime) ++ show (ctSec cTime)

run :: ExitCode -> FilePath -> IO OntologyMap

run exitCode tmpFile

| exitCode == ExitSuccess =

do

putStrLn tmpFile

t <- parseProc tmpFile

-- system ("cat " ++ tmpFile)

return t

| otherwise = error ("process stop! " ++ show exitCode)

-- | parse the tmp-ATerm-file from java-owl-parser

parseProc :: FilePath -> IO OntologyMap

parseProc filename =

do d <- readFile filename

let aterm = getATermFull $ readATerm d

case aterm of

AList paarList _ -> do

let om = Map.fromList $ parsingAll paarList

return om

_ -> error ("false file: " ++ show filename ++ ".")

-- | parse an ontology with all imported ontologies

parsingAll :: [ATerm] -> [(String, OntologyFile)]

parsingAll [] = []

parsingAll (aterm:res) =

(aTerm2Ontology aterm):(parsingAll res)

-- | translates ATerm to ontologyFile.

aTerm2Ontology :: ATerm -> (String, OntologyFile)

aTerm2Ontology (AAppl "UOPaar" [AAppl ouri _ _, ontoFile] _) =

(if head ouri == '"' then read ouri::String else ouri,

propagateNspaces (namespaces parsedOntologFile) parsedOntologFile)

where parsedOntologFile = fromATerm ontoFile:: OntologyFile

aTerm2Ontology _ = error "false ontology file."

-- | structure analysis bases of ontologyMap from owl parser

structureAna :: FilePath

-> HetcatsOpts

-> OntologyMap

-> IO (Maybe (LibName, -- filename

LibEnv -- DGraphs for imported modules

))

structureAna file opt ontoMap =

do

let (newOntoMap, dg) = buildDevGraph ontoMap

case (analysis opt) of

Structured -> do -- only structure analysis

printMsg $ labNodesDG dg

putStrLn $ show $ dgBody dg

return (Just (simpleLibName file,

simpleLibEnv file $ reverseGraph dg))

Skip -> return $ fail "" -- Nothing is ambiguous

_ -> staticAna file opt (newOntoMap, dg)

where -- output Analyzing messages for structured anaylsis

printMsg :: [LNode DGNodeLab] -> IO()

printMsg [] = putStrLn ""

printMsg ((_, node):rest) =

do putStrLn ("Analyzing ontology - printMsg " ++

(showName $ dgn_name node))

printMsg rest

-- simpleLibEnv and simpleLibName builded two simple lib-entities for

-- showGraph

simpleLibEnv :: FilePath -> DGraph -> LibEnv

simpleLibEnv filename dg = let

minNode = minimum $ nodesDG dg

nodeSig = NodeSig minNode $ signOf $ dgn_theory $ labDG dg minNode

esig = EmptyNode $ Logic OWL

in Map.singleton (simpleLibName filename) (computeDGraphTheories Map.empty dg)

{ globalEnv = Map.singleton (mkSimpleId "")

(SpecEntry (ExtGenSig (GenSig esig [] esig) nodeSig))}

simpleLibName :: FilePath -> LibName

simpleLibName s = emptyLibName $ "library_" ++ s

-- | static analysis if the HetcatesOpts is not only Structured.

-- | sequence call for nodesStaticAna on the basis of topologically

-- | sort of all nodes

staticAna :: FilePath

-> HetcatsOpts

-> (OntologyMap, DGraph)

-> IO (Maybe (LibName, -- filename

LibEnv -- DGraphs for imported modules

))

staticAna file opt (ontoMap, dg) =

do let topNodes = DFS.topsort $ dgBody dg

-- putStrLn $ show ontoMap

Result diagnoses res <-

nodesStaticAna (reverse topNodes) Map.empty ontoMap Map.empty dg []

case res of

Just (_, dg', _) -> do

showDiags opt $ List.nub diagnoses

let dg'' = insEdgesDG (reverseLinks $ labEdgesDG dg')

(delEdgesDG (edgesDG dg') dg')

-- putStrLn $ show dg''

return (Just (simpleLibName file,

simpleLibEnv file dg''))

_ -> error "no devGraph..."

-- | get all the edges of the given DG

edgesDG :: DGraph -> [Edge]

edgesDG = edges . dgBody

-- | delete a list of edges

delEdgesDG :: [Edge] -> DGraph -> DGraph

delEdgesDG es dg = dg { dgBody = delEdges es $ dgBody dg }

-- | a map to save which node has been analysed.

type SignMap = Map.Map Node (Sign, [Named Axiom])

getBFSnodeList :: Node -> DGraph -> [LNode DGNodeLab]

getBFSnodeList h dg = reverse $ map (matchNode dg) $ BFS.bfs h $ dgBody dg

-- | call to static analyse of all nodes

nodesStaticAna :: [Node] -- ^ topologically sort of graph

-> SignMap -- ^ an map of analyzed nodes

-> OntologyMap -- ^ an map of parsed ontology

-> Namespace -- ^ global namespaces

-> DGraph -- ^ current graph

-> [Diagnosis] -- ^ diagnosis of result

-> IO (Result (SignMap, DGraph, Namespace))

-- ^ result is tuple of new map of signs and sentences,

-- ^ new grpah, and new global namespace map.

nodesStaticAna [] signMap _ ns dg diag =

return $ Result diag (Just (signMap, dg, ns))

nodesStaticAna (h:r) signMap ontoMap globalNs dg diag = do

Result digs res <-

-- Each node must be analyzed with the associated imported nodes.

-- Those search for imported nodes is by bfs accomplished.

nodeStaticAna (getBFSnodeList h dg)

(emptySign, diag)

signMap ontoMap globalNs dg

case res of

Just (newSignMap, newDg, newGlobalNs) ->

nodesStaticAna r newSignMap ontoMap newGlobalNs newDg (diag++digs)

Nothing ->

-- Warning or Error message

nodesStaticAna r signMap ontoMap globalNs dg (diag++digs)

-- | call to static analyse of single nodes

nodeStaticAna :: [LNode DGNodeLab] -- ^ imported nodes of one node

-- ^ (incl. itself)

-> (Sign, [Diagnosis]) -- ^ here saved incoming sign, diagnoses

-> SignMap -- ^ an map of analyzed nodes

-> OntologyMap -- ^ an map of parsed ontology

-> Namespace -- ^ global namespaces

-> DGraph -- ^ current graph

-> IO (Result (SignMap, DGraph, Namespace))

nodeStaticAna [] _ _ _ _ _ = return $ Result [] Nothing -- remove warning

-- the last node in list is current top node.

nodeStaticAna

((n,topNode):[]) (inSig, oldDiags) signMap ontoMap globalNs dg =

do

let nn = dgn_name topNode

nodeName = getName nn

putStrLn ("Analyzing ontology " ++ (show nodeName))

case Map.lookup n signMap of

Just _ ->

return $ Result oldDiags (Just (signMap, dg, globalNs))

_ ->

do

-- putStrLn $ show $ ontoMap

let ontoF@(OntologyFile _ (Ontology mid _ _ _)) = fromJust $

Map.lookup (getNameFromNode nn) ontoMap

Result diag res =

-- static analysis of current ontology with all sign of

-- imported ontology.

basicOWLAnalysis (ontoF, inSig, emptyGlobalAnnos)

case res of

Just (_, ExtSign accSig _, sent) ->

do

let (newGlobalNs, tMap) =

integrateNamespaces globalNs (namespaceMap accSig)

newSent = map (renameNamespace tMap) sent

difSig = diffSig accSig inSig

newDifSig = renameNamespace tMap difSig

newSig = mkExtSign $ renameNamespace tMap accSig

-- the new node (with sign and sentence) has the sign of

-- accumulated sign with imported signs, but the sentences

-- is only of current ontology, because all sentences of

-- imported ontoloies can be automatically outputed by

-- showTheory (see GUI)

newLNode = (n, topNode

{ dgn_theory = G_theory OWL newSig startSigId

(toThSens newSent) startThId })

-- by remove of an node all associated edges are also deleted

-- so the deges must be saved before remove the node, then

-- appended again.

-- The out edges (after reverse are inn edges) must

-- also with new signature be changed.

ledges = innDG dg n ++

map (changeGMorOfEdges newSig) (outDG dg n)

newG = insEdgesDG ledges (insNodeDG newLNode

(delNodeDG n dg))

return $ Result (oldDiags ++ diag)

(Just ((Map.insert n (newDifSig, newSent) signMap),

newG, newGlobalNs))

_ -> do let actDiag = mkDiag Error

("error by analysing of "

++ (show mid)) ()

putStrLn (show diag)

return $ Result (actDiag:oldDiags) Nothing

-- The GMorphism of edge should also with new Signature be changed,

-- since with "show theory" the edges also with Sign one links

-- (see Static.DevGraph.joinG_sentences).

where changeGMorOfEdges newSign (n1, n2, edge) =

let newCMor = idComorphism (Logic OWL)

Result _ newGMor = gEmbedComorphism newCMor

(G_sign OWL newSign startSigId)

in (n1, n2, edge {dgl_morphism = fromJust newGMor})

-- The other nodes in list are examined whether they were already analyzed.

-- if yes then signs of it for further analysis are taken out; otherwise they

-- are first analyzed (with complete part tree of this node).

nodeStaticAna ((n, _):r) (inSig, oldDiags) signMap ontoMap globalNs dg

=

do

case Map.lookup n signMap of

Just (sig, _) ->

nodeStaticAna r ((integSign sig inSig), oldDiags)

signMap ontoMap globalNs dg

Nothing ->

do

Result digs' res' <-

nodeStaticAna (getBFSnodeList n dg)

(emptySign, [])

signMap ontoMap globalNs dg

case res' of

Just (signMap', dg', globalNs') ->

do

let (sig', _) = fromJust $ Map.lookup n signMap'

nodeStaticAna r

((integSign sig' inSig), (oldDiags ++ digs'))

signMap' ontoMap globalNs' dg'

_ -> do error "Error by analysis : nodeStaticAna"

nodeStaticAna r (inSig, oldDiags)

signMap ontoMap globalNs dg

-- | build up two sign

integSign :: Sign -> Sign -> Sign

integSign inSig totalSig =

let (newNamespace, transMap) =

integrateNamespaces (namespaceMap totalSig) (namespaceMap inSig)

in addSign (renameNamespace transMap inSig)

(totalSig {namespaceMap = newNamespace})

-- | turn edges over

reverseLinks :: [LEdge DGLinkLab] -> [LEdge DGLinkLab]

reverseLinks [] = []

reverseLinks ((source, target, edge):r) =

(target, source, edge):(reverseLinks r)

-- | turn all edges over of graph

reverseGraph :: DGraph -> DGraph

reverseGraph dg =

let newLinks = reverseLinks $ labEdgesDG dg

in insEdgesDG newLinks (delEdgesDG (edgesDG dg) dg)

-- | find a node in DevGraph

matchNode :: DGraph -> Node -> LNode DGNodeLab

matchNode dgraph node = (node, labDG dgraph node)