Fix the in_repository method When you searched for an ontology, the repository id was always set so this method was always true.

Remove default scope again Repositories marked as deleted shall still be browseable by the owner. If there is a default scope, many controllers and other parts of ontohub fail finding such a repo.

Allow owners to see their deleted repositories.

Revert "Use active scope for retrieving repositories." This reverts commit d053813dcf22b74cded34daf5734e54388e9bee6. Conflicts: app/controllers/home_controller.rb app/controllers/ontology_search_controller.rb app/helpers/application_helper.rb app/models/repository/destroying.rb

fix code style according to hound comments

Use active scope for retrieving repositories. I could have introduced a default scope, but this would result in broken migrations: Some migrations change existing repositories. They would fail at selecting repositories because there is no column 'destroying'. Also default scopes cannot be overridden.

Obey hound.

Run rename refactor script.

using helper method to determing state label

fix whitespace issues Includes fixes for the following whitespace-related issues: - Trailing whitespace at end of line - Tabs in file - No newline at end of file This commit fixes these issues for .rb, .coffee, and .sass files.

Some improvements to categories: * Selected categories are checked in ontologies#edit. * Show users ontologies on the right in categories#show. * Refactoring.

add helper to print a name

Return statements removed and some simplifications done.

Save the deployed revision into file.

display_commit more robust Don't raise an exception if the revision can not be determined.

Show context pane for categories controller.

Do not show context pane for links controller inside repository.

Fix the presence of user content

use subprocess instead of system-call Instead of using a system-call to fetch the current HEAD commit id, use a subprocess.

Display HEAD-commit-id in footer for development.

Heavy refactoring of the redesign code.